VIB-UGent Center for Plant Systems Biology

Publications in OpenAlex of which a co-author is affiliated to this organization

All publications | By field | By subfield

All publications [Next]
Title DOI
https://doi.org/10.1371/journal.pone.0112963 Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
https://doi.org/10.1038/nature11119 The tomato genome sequence provides insights into fleshy fruit evolution
https://doi.org/10.1038/cdd.2008.150 Classification of cell death: recommendations of the Nomenclature Committee on Cell Death 2009
https://doi.org/10.1128/mmbr.62.3.775-806.1998 Bacillus thuringiensis and Its Pesticidal Crystal Proteins
https://doi.org/10.1038/nprot.2007.324 Integration of biological networks and gene expression data using Cytoscape
https://doi.org/10.1038/cdd.2011.96 Molecular definitions of cell death subroutines: recommendations of the Nomenclature Committee on Cell Death 2012
https://doi.org/10.1016/j.tplants.2011.03.007 ROS signaling: the new wave?
https://doi.org/10.1093/nar/gkab1113 JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles
https://doi.org/10.1038/s41580-022-00499-2 Reactive oxygen species signalling in plant stress responses
https://doi.org/10.1038/nature07410 The Phaeodactylum genome reveals the evolutionary history of diatom genomes
https://doi.org/10.1093/nar/gkx1126 JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
https://doi.org/10.1038/nature12211 The Norway spruce genome sequence and conifer genome evolution
https://doi.org/10.1016/j.cell.2009.03.001 Auxin: A Trigger for Change in Plant Development
https://doi.org/10.1038/nature10625 The Medicago genome provides insight into the evolution of rhizobial symbioses
https://doi.org/10.1038/nbt1282 Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
https://doi.org/10.1105/tpc.110.080788 TheArabidopsisbHLH Transcription Factors MYC3 and MYC4 Are Targets of JAZ Repressors and Act Additively with MYC2 in the Activation of Jasmonate Responses  
https://doi.org/10.1038/nrg2600 The evolutionary significance of ancient genome duplications
https://doi.org/10.1038/nature10640 The genome of Tetranychus urticae reveals herbivorous pest adaptations
https://doi.org/10.1371/journal.pone.0001326 A High Quality Draft Consensus Sequence of the Genome of a Heterozygous Grapevine Variety
https://doi.org/10.1128/mmbr.62.3.807-813.1998 Revision of the Nomenclature for the Bacillus thuringiensis Pesticidal Crystal Proteins
https://doi.org/10.1038/s41396-018-0093-1 Disease-induced assemblage of a plant-beneficial bacterial consortium
https://doi.org/10.1016/j.copbio.2019.02.019 Lignin structure and its engineering
https://doi.org/10.1038/nature09016 The Ectocarpus genome and the independent evolution of multicellularity in brown algae
https://doi.org/10.1038/ng.807 The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
https://doi.org/10.1038/328033a0 Transgenic plants protected from insect attack
https://doi.org/10.1039/c5ee00204d Reductive lignocellulose fractionation into soluble lignin-derived phenolic monomers and dimers and processable carbohydrate pulps
https://doi.org/10.1038/347737a0 Induction of male sterility in plants by a chimaeric ribonuclease gene
https://doi.org/10.1016/j.tplants.2018.01.003 The Pivotal Role of Ethylene in Plant Growth
https://doi.org/10.1002/j.1460-2075.1987.tb02537.x Engineering herbicide resistance in plants by expression of a detoxifying enzyme
https://doi.org/10.1038/ncb1754 The auxin influx carrier LAX3 promotes lateral root emergence
https://doi.org/10.1016/j.gde.2015.11.003 Polyploidy and genome evolution in plants
https://doi.org/10.1016/j.copbio.2019.02.018 Lignin biosynthesis and its integration into metabolism
https://doi.org/10.1073/pnas.1019315108 Obligate biotrophy features unraveled by the genomic analysis of rust fungi
https://doi.org/10.1093/gigascience/giw015 Estimating the total number of phosphoproteins and phosphorylation sites in eukaryotic proteomes
https://doi.org/10.1038/nature10791 A novel sensor to map auxin response and distribution at high spatio-temporal resolution
https://doi.org/10.1126/science.aau6389 A specialized metabolic network selectively modulates Arabidopsis root microbiota
https://doi.org/10.1016/j.cell.2016.08.020 Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts
https://doi.org/10.1016/j.tplants.2008.12.003 How relevant are flavonoids as antioxidants in plants?
https://doi.org/10.1016/j.tplants.2007.03.012 Plant dormancy in the perennial context
https://doi.org/10.1093/plcell/koaa015 Polyploidy: an evolutionary and ecological force in stressful times
https://doi.org/10.1105/tpc.111.089300 The JAZ Proteins: A Crucial Interface in the Jasmonate Signaling Cascade
https://doi.org/10.1038/cdd.2009.44 Guidelines for the use and interpretation of assays for monitoring cell death in higher eukaryotes
https://doi.org/10.1002/j.1460-2075.1987.tb02538.x Characterization of the herbicide-resistance gene bar from Streptomyces hygroscopicus
https://doi.org/10.1146/annurev-genet-072610-155046 Variable Tandem Repeats Accelerate Evolution of Coding and Regulatory Sequences
https://doi.org/10.1007/978-3-540-87481-2_21 Robust Feature Selection Using Ensemble Feature Selection Techniques
https://doi.org/10.1242/dev.164376 Reactive oxygen species in plant development
https://doi.org/10.1146/annurev-cellbio-101011-155741 Hormonal Interactions in the Regulation of Plant Development
https://doi.org/10.1016/j.tplants.2013.04.006 Lateral root development in Arabidopsis: fifty shades of auxin
https://doi.org/10.1038/cdd.2009.184 Necroptosis, necrosis and secondary necrosis converge on similar cellular disintegration features
https://doi.org/10.1038/s41588-018-0040-0 Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
https://doi.org/10.1038/s41477-021-00897-y Plant flavones enrich rhizosphere Oxalobacteraceae to improve maize performance under nitrogen deprivation
https://doi.org/10.1016/j.immuni.2019.08.017 Stellate Cells, Hepatocytes, and Endothelial Cells Imprint the Kupffer Cell Identity on Monocytes Colonizing the Liver Macrophage Niche
https://doi.org/10.1038/nature16548 The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea
https://doi.org/10.1016/j.cell.2018.02.024 The Soil-Borne Legacy
https://doi.org/10.1038/ncomms5767 Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations
https://doi.org/10.1038/msb.2011.39 The auxin signalling network translates dynamic input into robust patterning at the shoot apex
https://doi.org/10.1038/cdd.2011.36 Morphological classification of plant cell deaths
https://doi.org/10.1038/nature08066 Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter
https://doi.org/10.1016/j.tplants.2012.02.003 Leaf size control: complex coordination of cell division and expansion
https://doi.org/10.1016/j.tplants.2004.07.006 Plant cell factories in the post-genomic era: new ways to produce designer secondary metabolites
https://doi.org/10.1038/nbt.1544 Genome sequence of the recombinant protein production host Pichia pastoris
https://doi.org/10.1016/j.copbio.2010.03.002 More from less: plant growth under limited water
https://doi.org/10.1016/j.cell.2018.06.033 The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization
https://doi.org/10.1038/s41477-018-0188-8 Fern genomes elucidate land plant evolution and cyanobacterial symbioses
https://doi.org/10.1038/nature12221 Pan genome of the phytoplankton Emiliania underpins its global distribution
https://doi.org/10.1186/s40168-017-0241-2 Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees
https://doi.org/10.1242/dev.057331 Brassinosteroids control meristem size by promoting cell cycle progression in Arabidopsis roots
https://doi.org/10.1007/s00425-012-1696-9 Reactive oxygen species and their role in plant defence and cell wall metabolism
https://doi.org/10.1016/j.cub.2010.09.007 A Novel Aux/IAA28 Signaling Cascade Activates GATA23-Dependent Specification of Lateral Root Founder Cell Identity
https://doi.org/10.1016/j.tplants.2012.03.001 Transcriptional machineries in jasmonate-elicited plant secondary metabolism
https://doi.org/10.1038/ncomms4606 The seco-iridoid pathway from Catharanthus roseus
https://doi.org/10.1002/ana.22644 KCNQ2 encephalopathy: Emerging phenotype of a neonatal epileptic encephalopathy
https://doi.org/10.1093/nar/gkx1002 PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics
https://doi.org/10.1016/j.tplants.2010.08.009 The roots of a new green revolution
https://doi.org/10.1038/ng.3149 The genome sequence of the orchid Phalaenopsis equestris
https://doi.org/10.1007/s00425-010-1310-y Strigolactones affect lateral root formation and root-hair elongation in Arabidopsis
https://doi.org/10.1111/j.1365-313x.2012.04946.x The SAUR19 subfamily of SMALL AUXIN UP RNA genes promote cell expansion
https://doi.org/10.1016/j.cell.2010.09.003 Cell Surface- and Rho GTPase-Based Auxin Signaling Controls Cellular Interdigitation in Arabidopsis
https://doi.org/10.1104/pp.113.220921 The Agony of Choice: How Plants Balance Growth and Survival under Water-Limiting Conditions
https://doi.org/10.1105/tpc.109.071316 Perturbation of Indole-3-Butyric Acid Homeostasis by the UDP-GlucosyltransferaseUGT74E2ModulatesArabidopsisArchitecture and Water Stress Tolerance
https://doi.org/10.1111/nph.14586 Identification of factors required for m 6 A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI
https://doi.org/10.1111/tpj.13801 The Physcomitrella patens chromosome‐scale assembly reveals moss genome structure and evolution
https://doi.org/10.5167/uzh-44099 Transgenerational adaptation of Arabidopsis to stress requires DNA methylation and the function of Dicer-like proteins
https://doi.org/10.1007/s00018-008-8465-8 The role of the ZEB family of transcription factors in development and disease
https://doi.org/10.1016/j.phytochem.2011.12.022 Oleanolic acid
https://doi.org/10.1038/s41586-019-1852-5 The water lily genome and the early evolution of flowering plants
https://doi.org/10.1002/j.1460-2075.1989.tb08368.x Apidaecins: antibacterial peptides from honeybees.
https://doi.org/10.1111/j.1365-3040.2005.01471.x Induction of systemic resistance in tomato by N‐acyl‐L‐homoserine lactone‐producing rhizosphere bacteria
https://doi.org/10.1093/nar/gkx1188 JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
https://doi.org/10.1038/ng.253 Flowering-time genes modulate meristem determinacy and growth form in Arabidopsis thaliana
https://doi.org/10.1016/j.tibtech.2014.03.001 Nanobody-based products as research and diagnostic tools
https://doi.org/10.1104/pp.91.2.694 Transformation of Brassica napus and Brassica oleracea Using Agrobacterium tumefaciens and the Expression of the bar and neo Genes in the Transgenic Plants
https://doi.org/10.1093/jxb/erw080 Spreading the news: subcellular and organellar reactive oxygen species production and signalling
https://doi.org/10.1038/nature10070 A novel protein family mediates Casparian strip formation in the endodermis
https://doi.org/10.1093/aobpla/pls014 Hydrogen peroxide—a central hub for information flow in plant cells
https://doi.org/10.1016/j.copbio.2018.01.014 Nitrification in agricultural soils: impact, actors and mitigation
https://doi.org/10.1038/nature23897 The Apostasia genome and the evolution of orchids
https://doi.org/10.1126/science.1194980 Arabidopsis Type I Metacaspases Control Cell Death
https://doi.org/10.1016/j.cell.2010.09.027 ABP1 Mediates Auxin Inhibition of Clathrin-Dependent Endocytosis in Arabidopsis
https://doi.org/10.1073/pnas.1300127110 Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants