VIB-KU Leuven Center for Microbiology

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Title DOI
https://doi.org/10.1038/nature10144 Molecular mechanisms and clinical applications of angiogenesis
https://doi.org/10.1038/nature24636 Fully integrated silicon probes for high-density recording of neural activity
https://doi.org/10.1038/s41591-019-0495-2 Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study
https://doi.org/10.1038/s41564-018-0337-x The neuroactive potential of the human gut microbiota in quality of life and depression
https://doi.org/10.1038/s41588-020-00763-1 Large-scale association analyses identify host factors influencing human gut microbiome composition
https://doi.org/10.1038/nrd3455 Principles and mechanisms of vessel normalization for cancer and other angiogenic diseases
https://doi.org/10.1016/j.cell.2013.06.037 Role of PFKFB3-Driven Glycolysis in Vessel Sprouting
https://doi.org/10.1038/nature06069 A central integrator of transcription networks in plant stress and energy signalling
https://doi.org/10.1038/s41596-020-0336-2 A scalable SCENIC workflow for single-cell gene regulatory network analysis
https://doi.org/10.1038/s41579-019-0196-3 Definitions and guidelines for research on antibiotic persistence
https://doi.org/10.1038/s41564-017-0072-8 Enterotypes in the landscape of gut microbial community composition
https://doi.org/10.1038/nature24460 Quantitative microbiome profiling links gut community variation to microbial load
https://doi.org/10.1111/j.1468-1331.2011.03501.x EFNS guidelines on the Clinical Management of Amyotrophic Lateral Sclerosis (MALS) – revised report of an EFNS task force
https://doi.org/10.1126/science.aau1567 A sustainable wood biorefinery for low–carbon footprint chemicals production
https://doi.org/10.1016/s0140-6736(11)60613-2 Addition of cetuximab to oxaliplatin-based first-line combination chemotherapy for treatment of advanced colorectal cancer: results of the randomised phase 3 MRC COIN trial
https://doi.org/10.1038/s41568-020-00320-2 The metabolism of cancer cells during metastasis
https://doi.org/10.1016/j.cell.2020.06.038 Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer’s Disease
https://doi.org/10.1080/02664760802366783 Analyzing linguistic data: a practical introduction to statistics using R
https://doi.org/10.1016/j.cell.2019.03.040 Marine DNA Viral Macro- and Microdiversity from Pole to Pole
https://doi.org/10.1038/mp.2011.154 De novo CNV analysis implicates specific abnormalities of postsynaptic signalling complexes in the pathogenesis of schizophrenia
https://doi.org/10.1016/j.cell.2018.02.044 The Human Gut Microbiome: From Association to Modulation
https://doi.org/10.1126/science.1261498 Patterns and ecological drivers of ocean viral communities
https://doi.org/10.1038/s41467-019-14198-8 Identification of region-specific astrocyte subtypes at single cell resolution
https://doi.org/10.1038/nrneurol.2009.218 The secretases: enzymes with therapeutic potential in Alzheimer disease
https://doi.org/10.1016/j.ebiom.2021.103293 Short chain fatty acids and its producing organisms: An overlooked therapy for IBD?
https://doi.org/10.1053/j.gastro.2016.02.014 Development and Validation of the Rome IV Diagnostic Questionnaire for Adults
https://doi.org/10.1093/hmg/11.21.2615 The disintegrin/metalloprotease ADAM 10 is essential for Notch signalling but not for alpha-secretase activity in fibroblasts
https://doi.org/10.1111/1574-6976.12065 Nutrient sensing and signaling in the yeastSaccharomyces cerevisiae
https://doi.org/10.1016/s1474-4422(11)70015-1 Neuroinflammation in amyotrophic lateral sclerosis: role of glial activation in motor neuron disease
https://doi.org/10.1016/s1474-4422(11)70261-7 A C9orf72 promoter repeat expansion in a Flanders-Belgian cohort with disorders of the frontotemporal lobar degeneration-amyotrophic lateral sclerosis spectrum: a gene identification study
https://doi.org/10.1128/mmbr.00025-07 Progress in Metabolic Engineering of Saccharomyces cerevisiae
https://doi.org/10.1186/1465-9921-7-135 IL-17 mRNA in sputum of asthmatic patients: linking T cell driven inflammation and granulocytic influx?
https://doi.org/10.1038/s41568-020-00302-4 Non-genetic mechanisms of therapeutic resistance in cancer
https://doi.org/10.1056/nejmoa0810739 Thrombomodulin Mutations in Atypical Hemolytic–Uremic Syndrome
https://doi.org/10.1136/gutjnl-2016-313271 Prebiotic inulin-type fructans induce specific changes in the human gut microbiota
https://doi.org/10.12688/f1000research.9050.1 CoNet app: inference of biological association networks using Cytoscape
https://doi.org/10.1038/s41592-019-0367-1 cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data
https://doi.org/10.1038/s41586-020-2269-x Statin therapy is associated with lower prevalence of gut microbiota dysbiosis
https://doi.org/10.1038/s41586-020-2121-3 Metabolites released from apoptotic cells act as tissue messengers
https://doi.org/10.1038/s41577-022-00694-4 Immunomodulation by endothelial cells — partnering up with the immune system?
https://doi.org/10.1038/s41579-020-0364-5 Tara Oceans: towards global ocean ecosystems biology
https://doi.org/10.1038/nm.4135 p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity
https://doi.org/10.1111/j.1751-7915.2009.00106.x Production and biological function of volatile esters in Saccharomyces cerevisiae
https://doi.org/10.1016/s1474-4422(15)00009-5 Epidemiology, pathophysiology, diagnosis, and management of intracranial artery dissection
https://doi.org/10.1152/physrev.00031.2008 Role and Therapeutic Potential of VEGF in the Nervous System
https://doi.org/10.1038/sdata.2015.23 Open science resources for the discovery and analysis of Tara Oceans data
https://doi.org/10.1016/s1389-1723(03)90112-5 Flavor-active esters: Adding fruitiness to beer
https://doi.org/10.1038/ncomms13601 Blood flow controls bone vascular function and osteogenesis
https://doi.org/10.1038/s41467-017-02342-1 A global ocean atlas of eukaryotic genes
https://doi.org/10.1111/jnc.13632 The amyloid cascade hypothesis: are we poised for success or failure?
https://doi.org/10.1161/atvbaha.109.185165 Mechanisms of Vessel Branching
https://doi.org/10.1016/j.schres.2016.05.017 How much physical activity do people with schizophrenia engage in? A systematic review, comparative meta-analysis and meta-regression
https://doi.org/10.1002/widm.1379 Interpretability of machine learning‐based prediction models in healthcare
https://doi.org/10.1038/s41396-019-0344-9 Bacterial persistence promotes the evolution of antibiotic resistance by increasing survival and mutation rates
https://doi.org/10.1111/j.1574-0862.2007.00237.x Globalization, privatization, and vertical coordination in food value chains in developing and transition countries
https://doi.org/10.1016/j.cell.2020.06.026 Microglia Require CD4 T Cells to Complete the Fetal-to-Adult Transition
https://doi.org/10.1038/s41573-023-00774-7 Artificial intelligence for natural product drug discovery
https://doi.org/10.1210/jcem.83.6.4763 Acute and Prolonged Critical Illness as Different Neuroendocrine Paradigms1
https://doi.org/10.1039/c7gc01324h Integrating lignin valorization and bio-ethanol production: on the role of Ni-Al2O3catalyst pellets during lignin-first fractionation
https://doi.org/10.1186/1754-6834-6-89 Development of a D-xylose fermenting and inhibitor tolerant industrial Saccharomyces cerevisiae strain with high performance in lignocellulose hydrolysates using metabolic and evolutionary engineering
https://doi.org/10.1038/s41586-022-05546-8 Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies
https://doi.org/10.1017/s0954422415000037 Towards microbial fermentation metabolites as markers for health benefits of prebiotics
https://doi.org/10.1038/s41467-018-05427-7 Identification of nine new susceptibility loci for endometrial cancer
https://doi.org/10.1093/nar/gkaf334 antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation
https://doi.org/10.3390/jof6040321 Amphotericin B and Other Polyenes—Discovery, Clinical Use, Mode of Action and Drug Resistance
https://doi.org/10.1083/jcb.147.2.277 Presenilin 1 Controls γ-Secretase Processing of Amyloid Precursor Protein in Pre-Golgi Compartments of Hippocampal Neurons
https://doi.org/10.1186/2049-2618-2-30 LotuS: an efficient and user-friendly OTU processing pipeline
https://doi.org/10.1007/s12525-021-00464-5 Digital transformation as an interaction-driven perspective between business, society, and technology
https://doi.org/10.1126/scitranslmed.aaf1471 Familial autoinflammation with neutrophilic dermatosis reveals a regulatory mechanism of pyrin activation
https://doi.org/10.1038/s41564-019-0483-9 Quantitative microbiome profiling disentangles inflammation- and bile duct obstruction-associated microbiota alterations across PSC/IBD diagnoses
https://doi.org/10.1038/s41586-020-03118-2 Local immune response to food antigens drives meal-induced abdominal pain
https://doi.org/10.1002/uog.19049 Sonographic examination of uterine niche in non‐pregnant women: a modified Delphi procedure
https://doi.org/10.1038/nrn2977 The role of G protein-coupled receptors in the pathology of Alzheimer's disease
https://doi.org/10.1016/j.cell.2016.05.020 Restricted Location of PSEN2/γ-Secretase Determines Substrate Specificity and Generates an Intracellular Aβ Pool
https://doi.org/10.1128/mbio.01365-16 Commensal Protection of Staphylococcus aureus against Antimicrobials by Candida albicans Biofilm Matrix
https://doi.org/10.1038/s41556-020-0547-3 Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma
https://doi.org/10.1038/s41564-020-0743-8 Genome-wide associations of human gut microbiome variation and implications for causal inference analyses
https://doi.org/10.1007/s00294-013-0400-3 Recent insights into Candida albicans biofilm resistance mechanisms
https://doi.org/10.1038/s41591-022-01688-4 Microbiome and metabolome features of the cardiometabolic disease spectrum
https://doi.org/10.1158/0008-5472.can-16-0186 The BRCA1-Δ11q Alternative Splice Isoform Bypasses Germline Mutations and Promotes Therapeutic Resistance to PARP Inhibition and Cisplatin
https://doi.org/10.1126/science.aao4827 Secreted amyloid-β precursor protein functions as a GABA B R1a ligand to modulate synaptic transmission
https://doi.org/10.1053/j.gastro.2019.07.025 Metabolic Functions of Gut Microbes Associate With Efficacy of Tumor Necrosis Factor Antagonists in Patients With Inflammatory Bowel Diseases
https://doi.org/10.1126/science.abn4705 Mitochondria metabolism sets the species-specific tempo of neuronal development
https://doi.org/10.1038/s41467-020-19589-w Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology
https://doi.org/10.1093/femsre/fuy041 The molecular biology of fruity and floral aromas in beer and other alcoholic beverages
https://doi.org/10.1016/j.jaac.2018.10.018 Bullying Victimization and Suicide Attempt Among Adolescents Aged 12–15 Years From 48 Countries
https://doi.org/10.3389/fmicb.2020.00952 Innovative Strategies Toward the Disassembly of the EPS Matrix in Bacterial Biofilms
https://doi.org/10.1007/s00401-018-1835-x Energy metabolism in ALS: an underappreciated opportunity?
https://doi.org/10.1002/adem.201300558 Effect of SLM Parameters on Transformation Temperatures of Shape Memory Nickel Titanium Parts
https://doi.org/10.1016/j.neuron.2011.07.013 The Neurovascular Link in Health and Disease: Molecular Mechanisms and Therapeutic Implications
https://doi.org/10.1073/pnas.1103010108 Jasmonate signaling involves the abscisic acid receptor PYL4 to regulate metabolic reprogramming in Arabidopsis and tobacco
https://doi.org/10.1016/j.neuron.2017.02.001 Hallmarks of Alzheimer’s Disease in Stem-Cell-Derived Human Neurons Transplanted into Mouse Brain
https://doi.org/10.1093/femsre/fux027 Practical considerations for large-scale gut microbiome studies
https://doi.org/10.1186/s13059-016-1052-7 Heritable components of the human fecal microbiome are associated with visceral fat
https://doi.org/10.1186/s13024-019-0323-7 Endo-lysosomal dysregulations and late-onset Alzheimer’s disease: impact of genetic risk factors
https://doi.org/10.1093/annonc/mdu288 Plasma circulating tumor DNA as an alternative to metastatic biopsies for mutational analysis in breast cancer
https://doi.org/10.1111/nph.12325 Bioengineering of plant (tri)terpenoids: from metabolic engineering of plants to synthetic biology in vivo and in vitro
https://doi.org/10.1038/s41586-022-05242-7 A cellular hierarchy in melanoma uncouples growth and metastasis
https://doi.org/10.1136/bmjopen-2014-005611 Current and future use of point-of-care tests in primary care: an international survey in Australia, Belgium, The Netherlands, the UK and the USA
https://doi.org/10.1038/ng.3154 Common variation in PHACTR1 is associated with susceptibility to cervical artery dissection