ProDigest (Belgium)

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https://doi.org/10.1093/femsre/fuaa060 The impact of the Fungus-Host-Microbiota interplay uponCandida albicansinfections: current knowledge and new perspectives
https://doi.org/10.1080/10408398.2017.1421900 Can dynamicin vitrodigestion systems mimic the physiological reality?
https://doi.org/10.1186/1471-2180-14-133 The HMI™ module: a new tool to study the Host-Microbiota Interaction in the human gastrointestinal tract in vitro
https://doi.org/10.1007/978-3-319-16104-4_27 The Simulator of the Human Intestinal Microbial Ecosystem (SHIME®)
https://doi.org/10.3390/nu12092808 Effects of Human Milk Oligosaccharides on the Adult Gut Microbiota and Barrier Function
https://doi.org/10.3390/nu11071464 The Intestinal Fate of Citrus Flavanones and Their Effects on Gastrointestinal Health
https://doi.org/10.1016/j.ijpharm.2018.11.020 A four-strain probiotic exerts positive immunomodulatory effects by enhancing colonic butyrate production in vitro
https://doi.org/10.1021/acs.jafc.7b02049 Gastrointestinal Simulation Model TWIN-SHIME Shows Differences between Human Urolithin-Metabotypes in Gut Microbiota Composition, Pomegranate Polyphenol Metabolism, and Transport along the Intestinal Tract
https://doi.org/10.1093/femsec/fiac038 The impact of environmental pH on the gut microbiota community structure and short chain fatty acid production
https://doi.org/10.1007/s00418-017-1539-7 T84 monolayers are superior to Caco-2 as a model system of colonocytes
https://doi.org/10.1016/j.jff.2015.11.005 Arabinogalactan and fructooligosaccharides improve the gut barrier function in distinct areas of the colon in the Simulator of the Human Intestinal Microbial Ecosystem
https://doi.org/10.1007/s12603-014-0480-x Twelve-month consumption of a polyphenol extract from olive (Olea europaea) in a double blind, randomized trial increases serum total osteocalcin levels and improves serum lipid profiles in postmenopausal women with osteopenia
https://doi.org/10.1021/acs.jafc.7b04611 Arabinoxylo-Oligosaccharides and Inulin Impact Inter-Individual Variation on Microbial Metabolism and Composition, Which Immunomodulates Human Cells
https://doi.org/10.1016/j.ijpx.2019.100021 A synbiotic concept containing spore-forming Bacillus strains and a prebiotic fiber blend consistently enhanced metabolic activity by modulation of the gut microbiome in vitro
https://doi.org/10.1016/j.ijpharm.2020.119648 A 4-strain probiotic supplement influences gut microbiota composition and gut wall function in patients with ulcerative colitis
https://doi.org/10.3390/nu12071917 A Novel Non-Digestible, Carrot-Derived Polysaccharide (cRG-I) Selectively Modulates the Human Gut Microbiota while Promoting Gut Barrier Integrity: An Integrated In Vitro Approach
https://doi.org/10.1371/journal.pone.0197692 Establishing a mucosal gut microbial community in vitro using an artificial simulator
https://doi.org/10.3390/nu14122546 Human Milk Oligosaccharides and Lactose Differentially Affect Infant Gut Microbiota and Intestinal Barrier In Vitro
https://doi.org/10.3390/microorganisms10040762 The Effect of Amino Acids on Production of SCFA and bCFA by Members of the Porcine Colonic Microbiota
https://doi.org/10.3390/nu13030726 A Comparison of the In Vitro Effects of 2’Fucosyllactose and Lactose on the Composition and Activity of Gut Microbiota from Infants and Toddlers
https://doi.org/10.1016/j.ijpx.2021.100087 Influence of probiotic bacteria on gut microbiota composition and gut wall function in an in-vitro model in patients with Parkinson's disease
https://doi.org/10.1093/jas/skaa173 Dried yeast cell walls high in beta-glucan and mannan-oligosaccharides positively affect microbial composition and activity in the canine gastrointestinal tract in vitro
https://doi.org/10.3389/fnut.2021.700571 Comparative Effect of 22 Dietary Sources of Fiber on Gut Microbiota of Healthy Humans in vitro
https://doi.org/10.3390/nu13041125 Antioxidant Vitamins and Prebiotic FOS and XOS Differentially Shift Microbiota Composition and Function and Improve Intestinal Epithelial Barrier In Vitro
https://doi.org/10.1016/j.jff.2017.01.030 Fate of chitin-glucan in the human gastrointestinal tract as studied in a dynamic gut simulator (SHIME®)
https://doi.org/10.1007/s00394-021-02654-5 A randomized, placebo-controlled trial investigating the acute and chronic benefits of American Ginseng (Cereboost®) on mood and cognition in healthy young adults, including in vitro investigation of gut microbiota changes as a possible mechanism of action
https://doi.org/10.3390/nu13113897 Water Kefir and Derived Pasteurized Beverages Modulate Gut Microbiota, Intestinal Permeability and Cytokine Production In Vitro
https://doi.org/10.1038/s41596-021-00580-8 Rapid ex vivo molecular fingerprinting of biofluids using laser-assisted rapid evaporative ionization mass spectrometry
https://doi.org/10.3390/microorganisms9102142 Consistent Prebiotic Effects of Carrot RG-I on the Gut Microbiota of Four Human Adult Donors in the SHIME® Model despite Baseline Individual Variability
https://doi.org/10.1016/j.jconrel.2024.04.016 The colon targeting efficacies of mesalazine medications and their impacts on the gut microbiome
https://doi.org/10.1016/j.phymed.2023.154996 Possible role of the gut microbiome in mediating the beneficial effects of the six-herbal formulation STW 5-II on digestive health
https://doi.org/10.3389/fmicb.2024.1358456 Saccharomyces cerevisiae derived postbiotic alters gut microbiome metabolism in the human distal colon resulting in immunomodulatory potential in vitro
https://doi.org/10.1128/spectrum.03933-22 Clostridium scindens secretome suppresses virulence gene expression of Clostridioides difficile in a bile acid-independent manner
https://doi.org/10.3390/nu16162791 Survival of Probiotic Bacterial Cells in the Upper Gastrointestinal Tract and the Effect of the Surviving Population on the Colonic Microbial Community Activity and Composition
https://doi.org/10.1007/s11130-023-01043-z Age-Dependent Prebiotic Effects of Soluble Corn Fiber in M-SHIME® Gut Microbial Ecosystems
https://doi.org/10.1016/j.jconrel.2024.03.039 Poly(D,l-lactide-co-glycolide) particles are metabolised by the gut microbiome and elevate short chain fatty acids
https://doi.org/10.3390/biotech11020014 A Freeze-Dried Cranberry Powder Consistently Enhances SCFA Production and Lowers Abundance of Opportunistic Pathogens In Vitro
https://doi.org/10.1016/j.foodhyd.2024.110036 Structure dependent fermentation kinetics of dietary carrot rhamnogalacturonan-I in an in vitro gut model
https://doi.org/10.1128/aem.01880-22 Capacity of a Microbial Synbiotic To Rescue the In Vitro Metabolic Activity of the Gut Microbiome following Perturbation with Alcohol or Antibiotics
https://doi.org/10.3390/applmicrobiol3010008 Galactooligosaccharide (GOS) Reduces Branched Short-Chain Fatty Acids, Ammonium, and pH in a Short-Term Colonic Fermentation Model
https://doi.org/10.1371/journal.pone.0322877 In vitro fermentation of yeast cell walls (mannan-oligosaccharide) and purified β-glucans modulates the colonic microbiota of dogs with inflammatory bowel disease and demonstrates protective effects on barrier integrity and anti-inflammatory properties
https://doi.org/10.3390/nutraceuticals3040035 The Novel Synbiotic, AG1®, Increases Short-Chained Fatty Acid Production in the Simulator of Human Intestinal Microbial Ecosystem (SHIME) Model®
https://doi.org/10.3390/nu16111570 Co-Supplementation of Baobab Fiber and Arabic Gum Synergistically Modulates the In Vitro Human Gut Microbiome Revealing Complementary and Promising Prebiotic Properties
https://doi.org/10.1016/j.gastha.2022.10.011 In Vitro Efficacy of Targeted Fermentable Oligosaccharides, Disaccharides, Monosaccharides, and Polyols Enzymatic Digestion in a High-Fidelity Simulated Gastrointestinal Environment
https://doi.org/10.3390/applbiosci2040041 AG1®, a Novel Synbiotic, Demonstrates Superior Mineral Bioaccessibility and Bioavailability Compared to a Tablet Multivitamin and Mineral Supplement Using an In Vitro Model of the Upper Gastrointestinal Tract
https://doi.org/10.1016/j.foodres.2025.116098 In vitro human gastrointestinal digestibility and colonic fermentation of edible yeast-based protein: A comparative study with whey and casein
https://doi.org/10.1016/j.erss.2025.104176 Addressing the gaps in understanding and assessing energy communities
https://doi.org/10.1002/mds.70047 Effects of a Four‐Strain Probiotic on Gut Microbiota, Inflammation, and Symptoms in Parkinson's Disease: A Randomized Clinical Trial
https://doi.org/10.1111/1758-2229.12056 Arabinogalactan and fructo‐oligosaccharides have a different fermentation profile in the S imulator of the H uman I ntestinal M icrobial E cosystem ( SHIME ® )
https://doi.org/10.3945/jn.114.201772 Arabinoxylan in Wheat Is More Responsible Than Cellulose for Promoting Intestinal Barrier Function in Weaned Male Piglets
https://doi.org/10.1016/j.ijfoodmicro.2010.02.030 In vitro modulation of the human gastrointestinal microbial community by plant-derived polysaccharide-rich dietary supplements
https://doi.org/10.3390/microorganisms8071028 Bacillus subtilis HU58 and Bacillus coagulans SC208 Probiotics Reduced the Effects of Antibiotic-Induced Gut Microbiome Dysbiosis in an M-SHIME® Model
https://doi.org/10.1080/07315724.2016.1257961 New Frontiers in Fibers: Innovative and Emerging Research on the Gut Microbiome and Bone Health
https://doi.org/10.1002/mnfr.201800607 Aronia (Aronia melanocarpa) Polyphenols Modulate the Microbial Community in a Simulator of the Human Intestinal Microbial Ecosystem (SHIME) and Decrease Secretion of Proinflammatory Markers in a Caco‐2/endothelial Cell Coculture Model
https://doi.org/10.1021/jf402137r A Dried Yeast Fermentate Selectively Modulates both the Luminal and Mucosal Gut Microbiota and Protects against Inflammation, As Studied in an Integrated in Vitro Approach
https://doi.org/10.1016/j.jff.2017.09.008 Aronia ( Aronia melanocarpa ) phenolics bioavailability in a combined in vitro digestion/Caco-2 cell model is structure and colon region dependent
https://doi.org/10.1016/j.jff.2019.103484 2′-Fucosyllactose alters the composition and activity of gut microbiota from formula-fed infants receiving complementary feeding in a validated intestinal model
https://doi.org/10.1016/j.jchromb.2019.06.013 Development of an analytical method to detect short-chain fatty acids by SPME-GC–MS in samples coming from an in vitro gastrointestinal model
https://doi.org/10.1038/npjbiofilms.2016.16 Arabinoxylans, inulin and Lactobacillus reuteri 1063 repress the adherent-invasive Escherichia coli from mucus in a mucosa-comprising gut model
https://doi.org/10.1021/acs.jafc.9b05912 Fate and Bioaccessibility of Iodine in Food Prepared from Agronomically Biofortified Wheat and Rice and Impact of Cofertilization with Zinc and Selenium
https://doi.org/10.1186/s12906-017-1948-0 A yeast fermentate improves gastrointestinal discomfort and constipation by modulation of the gut microbiome: results from a randomized double-blind placebo-controlled pilot trial
https://doi.org/10.1021/acsomega.8b01360 Different Oat Ingredients Stimulate Specific Microbial Metabolites in the Gut Microbiome of Three Human Individuals in Vitro
https://doi.org/10.1016/j.foodres.2021.110676 Treatment with a spore-based probiotic containing five strains of Bacillus induced changes in the metabolic activity and community composition of the gut microbiota in a SHIME® model of the human gastrointestinal system
https://doi.org/10.1016/j.foodres.2017.06.002 Quantification of egg ovalbumin hydrolysate-derived anti-hypertensive peptides in an in vitro model combining luminal digestion with intestinal Caco-2 cell transport
https://doi.org/10.3389/fnut.2020.608495 Comparison of the Bifidogenic Effects of Goat and Cow Milk-Based Infant Formulas to Human Breast Milk in an in vitro Gut Model for 3-Month-Old Infants
https://doi.org/10.1016/j.jff.2018.05.053 A combination of xylooligosaccharides and a polyphenol blend affect microbial composition and activity in the distal colon exerting immunomodulating properties on human cells
https://doi.org/10.1039/c7fo00839b Egg-derived bioactive peptides with ACE-inhibitory properties: a literature update
https://doi.org/10.3390/nu13030963 Development of an Affordable, Sustainable and Efficacious Plant-Based Immunomodulatory Food Ingredient Based on Bell Pepper or Carrot RG-I Pectic Polysaccharides
https://doi.org/10.1093/jas/skz357 Development and validation of the Simulator of the Canine Intestinal Microbial Ecosystem (SCIME)1
https://doi.org/10.1021/acs.jafc.9b05085 Yeast-Derived Formulations Are Differentially Fermented by the Canine and Feline Microbiome As Assessed in a Novel In Vitro Colonic Fermentation Model
https://doi.org/10.3920/bm2019.0064 Lactobacillus rhamnosus GG and Saccharomyces cerevisiae boulardii exert synergistic antipathogenic activity in vitro against enterotoxigenic Escherichia coli
https://doi.org/10.1152/ajpendo.00108.2020 Comparison of the effects of soluble corn fiber and fructooligosaccharides on metabolism, inflammation, and gut microbiome of high-fat diet-fed mice
https://doi.org/10.1128/aem.02647-20 Mucin as a Functional Niche Is a More Important Driver of In Vitro Gut Microbiota Composition and Functionality than Akkermansia muciniphila Supplementation
https://doi.org/10.3920/bm2020.0180 Lacticaseibacillus rhamnosus GG and Saccharomyces cerevisiae boulardii supplementation exert protective effects on human gut microbiome following antibiotic administration in vitro
https://doi.org/10.1002/mnfr.201700881 A Critical Evaluation of In Vitro Hesperidin 2S Bioavailability in a Model Combining Luminal (Microbial) Digestion and Caco‐2 Cell Absorption in Comparison to a Randomized Controlled Human Trial
https://doi.org/10.3390/nu12061552 In Vitro Evaluation of Prebiotic Properties of a Commercial Artichoke Inflorescence Extract Revealed Bifidogenic Effects
https://doi.org/10.3390/nu12082268 Synbiotic Effect of Bifidobacterium lactis CNCM I-3446 and Bovine Milk-Derived Oligosaccharides on Infant Gut Microbiota
https://doi.org/10.1016/j.jff.2015.04.039 Addition of acacia gum to a FOS/inulin blend improves its fermentation profile in the Simulator of the Human Intestinal Microbial Ecosystem (SHIME®)
https://doi.org/10.4315/0362-028x.jfp-18-587 A Bacteriophage Cocktail Eliminates Salmonella Typhimurium from the Human Colonic Microbiome while Preserving Cytokine Signaling and Preventing Attachment to and Invasion of Human Cells by Salmonella In Vitro
https://doi.org/10.3390/pathogens10080927 2′FL and LNnT Exert Antipathogenic Effects against C. difficile ATCC 9689 In Vitro, Coinciding with Increased Levels of Bifidobacteriaceae and/or Secondary Bile Acids
https://doi.org/10.3390/nu13082683 Adjuvant Effect of Orally Applied Preparations Containing Non-Digestible Polysaccharides on Influenza Vaccination in Healthy Seniors: A Double-Blind, Randomised, Controlled Pilot Trial
https://doi.org/10.3390/microorganisms9091981 A Pectin-Rich, Baobab Fruit Pulp Powder Exerts Prebiotic Potential on the Human Gut Microbiome In Vitro
https://doi.org/10.3390/pathogens10020235 In vitro–in vivo Validation of Stimulatory Effect of Oat Ingredients on Lactobacilli
https://doi.org/10.3390/nu13093249 Chitin Glucan Shifts Luminal and Mucosal Microbial Communities, Improve Epithelial Barrier and Modulates Cytokine Production In Vitro
https://doi.org/10.1021/acs.jafc.9b05202 Metabolic Analysis of Regionally Distinct Gut Microbial Communities Using an In Vitro Platform
https://doi.org/10.3389/fmicb.2022.1054061 Development of a reproducible small intestinal microbiota model and its integration into the SHIME®-system, a dynamic in vitro gut model
https://doi.org/10.1016/j.mimet.2019.105735 Baby-SPIME: A dynamic in vitro piglet model mimicking gut microbiota during the weaning process
https://doi.org/10.1002/uog.22099 Screening for COVID‐19 at childbirth: is it effective?
https://doi.org/10.1016/j.ijpharm.2021.120977 Comparison of protection and release behavior of different capsule polymer combinations based on L. acidophilus survivability and function and caffeine release
https://doi.org/10.1186/s13568-020-01015-5 Exploration of isoxanthohumol bioconversion from spent hops into 8-prenylnaringenin using resting cells of Eubacterium limosum
https://doi.org/10.3390/nu15194229 Ex Vivo Colonic Fermentation of NUTRIOSE® Exerts Immuno-Modulatory Properties and Strong Anti-Inflammatory Effects
https://doi.org/10.3389/fphar.2022.820543 The Modulation of Chaihu Shugan Formula on Microbiota Composition in the Simulator of the Human Intestinal Microbial Ecosystem Technology Platform and its Influence on Gut Barrier and Intestinal Immunity in Caco-2/THP1-Blue™ Cell Co-Culture Model
https://doi.org/10.1007/s13679-016-0196-9 Satiety Innovations: Food Products to Assist Consumers with Weight Loss, Evidence on the Role of Satiety in Healthy Eating: Overview and In Vitro Approximation
https://doi.org/10.1016/j.ijpharm.2022.122441 In vitro evaluation of the gastrointestinal delivery of acid-sensitive pancrelipase in a next generation enteric capsule using an exocrine pancreatic insufficiency disease model
https://doi.org/10.2217/fmb-2022-0066 Effects of Combined Prebiotic, Probiotic, IgG and Amino Acid Supplementation on the Gut Microbiome Of Patients With Inflammatory Bowel Disease
https://doi.org/10.3390/nu15030653 Investigation of Enterogermina’s Protective and Restorative Mechanisms on the Gut Microbiota with PPI, Using SHIME Technology
https://doi.org/10.1007/s00253-021-11241-x Comparative analysis of the gut microbiota cultured in vitro using a single colon versus a 3-stage colon experimental design
https://doi.org/10.3390/nutraceuticals3010013 The Response of a Leaky Gut Cell Culture Model (Caco-2/THP-1 Co-Culture) to Administration of Alternative Protein Sources
https://doi.org/10.3390/children10030430 Infant Fecal Fermentations with Galacto-Oligosaccharides and 2′-Fucosyllactose Show Differential Bifidobacterium longum Stimulation at Subspecies Level
https://doi.org/10.3390/microorganisms12071263 AG1®, a Novel Synbiotic, Maintains Gut Barrier Function following Inflammatory Challenge in a Caco-2/THP1-Blue™ Co-Culture Model